JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPPP_chr5_654862_698352	0/0	t0072	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0073	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0074	5316	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0075	5383	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0076	5309	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0077	5309	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0078	5216	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0079	5311	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0080	5313	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0081	5311	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0082	5309	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0083	5422	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0084	5422	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0085	5275	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0086	5284	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0087	5308	1	0	0	0	1	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0088	5284	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0089	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0090	5320	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0091	5320	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0092	5311	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0093	5316	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0094	5285	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0095	5322	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0096	5216	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	t0097	5383	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPRA1_chr3_127566232_127595733	1/1	t0001	2631	225	51	28	121	6	17	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0002	2631	64	0	12	38	3	11	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0003	2622	27	2	11	3	3	8	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0004	2631	26	9	6	5	2	4	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0005	2631	23	7	2	11	0	3	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0006	2631	8	5	3	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0007	2596	6	0	1	0	1	4	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0008	2628	5	4	1	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0009	2631	5	0	0	5	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0010	2631	4	4	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0011	2631	3	2	1	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0012	2629	3	0	2	0	1	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0013	2631	3	0	1	0	2	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0014	2631	3	3	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0015	2631	2	0	0	2	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0016	2622	2	0	2	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0017	2631	2	2	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0018	2631	2	2	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0019	2631	2	0	0	2	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0020	2628	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0021	2631	1	0	0	0	0	1	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0022	2631	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0023	2631	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0024	2631	1	0	0	1	0	0	copy fasta	TPRA1	chr3	127566232	127595733