JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPRA1_chr3_127566232_127595733	0/0	t0025	2631	1	0	1	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0026	2631	1	0	1	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0027	2631	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0028	2631	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0029	2631	1	0	0	1	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	t0030	2631	1	0	0	1	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRG1L_chr1_3620015_3635127	0/1	t0001	1560	145	7	35	72	10	20	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0002	1560	79	3	8	52	3	13	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0003	1564	34	1	4	23	1	5	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0004	1564	33	31	2	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0005	1564	23	4	14	0	1	4	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	1/0	t0006	1583	23	7	12	0	3	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0007	1564	22	21	1	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0008	1564	15	13	2	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0009	1564	7	0	0	7	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0010	1562	5	5	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0011	1560	3	0	0	3	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0012	1564	2	0	0	0	0	2	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0013	1564	2	2	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0014	1560	2	1	1	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0015	1560	1	0	1	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0016	1583	1	1	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0017	1560	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0018	1564	1	1	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0019	1560	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0020	1560	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0021	1560	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0022	1560	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	t0023	1583	1	1	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1_chr3_189166971_189330304	0/0	t0001	4656	31	9	5	13	0	4	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	1/0	t0002	4655	31	0	8	14	3	5	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0003	4653	27	0	3	19	1	4	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0004	4656	23	3	10	8	0	2	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0005	4655	22	0	7	10	2	3	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0006	4653	20	0	3	11	0	6	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0007	4655	16	15	0	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/1	t0008	4656	12	2	6	0	1	2	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0009	4655	12	12	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0010	4656	10	0	0	9	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0011	4653	9	7	1	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0012	4656	5	3	2	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0013	4653	4	4	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0014	4656	4	0	0	4	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0015	4655	3	3	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0016	4656	3	2	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0017	4656	3	3	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0018	4656	3	0	0	1	0	2	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0019	4654	3	0	0	3	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0020	4656	3	0	0	3	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0021	4656	3	0	1	1	1	0	copy fasta	TPRG1	chr3	189166971	189330304