JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPRG1_chr3_189166971_189330304	0/0	t0022	4656	3	0	1	2	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0023	4656	2	0	1	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0024	4655	2	2	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0025	4654	2	1	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0026	4656	2	2	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0027	4654	2	0	1	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0028	4655	2	2	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0029	4656	2	0	2	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0030	4656	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0031	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0032	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0033	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0034	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0035	4653	1	0	1	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0036	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0037	4653	1	0	1	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0038	4657	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0039	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0040	4655	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0041	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0042	4656	1	0	1	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0043	4656	1	0	0	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0044	4656	1	0	0	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0045	4656	1	0	0	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0046	4653	1	0	1	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0047	4655	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0048	4653	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0049	4655	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0050	4655	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0051	4655	1	0	0	0	0	1	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0052	4656	1	0	1	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	t0053	4656	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRKB_chr2_73724873_73742345	1/1	t0001	137	417	88	79	188	14	46	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	t0002	137	10	7	3	0	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	t0003	137	1	1	0	0	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRN_chr9_137186619_137205741	1/1	t0001	524	367	85	71	151	14	44	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	t0002	524	3	0	0	3	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	t0003	524	1	1	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	t0004	524	1	0	1	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRX1_chr19_47796232_47809551	1/0	t0001	556	215	82	35	66	13	18	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	t0002	556	181	13	37	104	3	24	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/1	t0003	556	12	0	5	2	0	4	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	t0004	556	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	t0005	556	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX2_chr19_47854235_47866721	1/1	t0001	222	407	89	84	174	14	44	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	t0002	222	2	0	0	2	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	t0003	222	1	1	0	0	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPR_chr1_186306652_186380253	0/1	t0001	2545	231	40	38	120	6	26	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	1/0	t0002	2545	134	25	31	59	6	12	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0003	2545	14	14	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253