JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPR_chr1_186306652_186380253	0/0	t0004	2542	7	0	6	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0005	2545	6	3	0	0	1	2	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0006	2545	2	2	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0007	2545	2	1	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0008	2545	2	0	2	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0009	2545	2	0	2	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0010	2545	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0011	2545	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0012	2568	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0013	2525	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0014	2545	1	0	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0015	2545	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0016	2545	1	0	0	0	1	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	t0017	2545	1	0	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPSAB1_chr16_1235705_1247554	0/0	t0000	0	16	1	0	15	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0001	339	136	22	14	82	5	13	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0002	339	87	40	23	20	1	3	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	1/1	t0003	339	34	4	14	5	3	6	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0004	339	13	0	9	0	2	2	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0005	339	2	2	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0006	339	1	0	0	0	1	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	t0007	339	1	1	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSB2_chr16_1223336_1235184	0/0	t0001	338	171	29	26	94	9	13	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/1	t0002	338	100	27	30	21	2	19	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0003	338	19	6	8	1	2	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0004	338	18	2	2	12	0	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0005	338	17	15	2	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0006	338	8	5	0	3	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0007	338	4	0	2	0	0	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	1/0	t0008	338	2	0	0	0	1	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0009	338	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0010	338	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0011	338	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0012	338	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	t0013	338	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSD1_chr16_1251069_1264008	0/0	t0001	1258	47	7	8	22	4	6	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0002	1198	28	11	12	4	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/1	t0003	1198	18	0	11	0	2	4	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0004	1221	17	0	2	12	0	3	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0005	1163	15	1	9	0	2	3	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0006	1089	13	4	7	0	2	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0007	1164	6	0	0	2	2	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0008	1125	6	6	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0009	1515	5	3	2	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0010	1109	4	0	2	2	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0011	1347	4	0	0	4	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0012	1163	4	4	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0013	1109	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0014	1259	3	0	0	3	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0015	1221	3	0	0	3	0	0	copy fasta	TPSD1	chr16	1251069	1264008