JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TPSD1_chr16_1251069_1264008	0/0	t0016	1125	3	2	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0017	1109	2	2	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0018	1199	2	0	2	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0019	1258	2	0	2	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0020	1146	2	1	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0021	1258	2	0	0	2	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0022	1296	2	0	0	2	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0023	1256	2	0	0	2	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0024	1274	2	2	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0025	1258	2	0	0	2	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0026	1198	2	0	0	0	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0027	1383	2	2	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0028	1479	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0029	1515	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0030	1478	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0031	1258	1	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0032	1296	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0033	1227	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0034	1201	1	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0035	1261	1	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0036	1147	1	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0037	1260	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0038	1259	1	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0039	1258	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0040	1446	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0041	1205	1	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0042	976	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0043	1109	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0044	1109	1	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0045	1515	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0046	1221	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0047	1184	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0048	1222	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0049	1260	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0050	1464	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0051	1146	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0052	1858	1	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0053	1556	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0054	1295	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0055	1610	1	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0056	1296	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0057	1277	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0058	1370	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0059	1445	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0060	1222	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0061	1931	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0062	1333	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0063	1408	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0064	1219	1	0	0	1	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0065	1126	1	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008