JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPSD1_chr16_1251069_1264008	0/0	t0066	1146	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0067	1163	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0068	1258	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0069	1296	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0070	1295	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0071	1386	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0072	977	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0073	976	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0074	1202	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0075	1348	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0076	1184	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	1/0	t0077	845	1	0	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0078	1090	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0079	1180	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0080	1034	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0081	1161	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0082	1161	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0083	1088	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0084	1109	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0085	1235	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0086	1199	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0087	1198	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0088	977	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0089	1198	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0090	939	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0091	939	1	0	0	0	0	1	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0092	976	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0093	1274	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0094	977	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0095	1258	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	t0096	1220	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSG1_chr16_1216651_1230268	1/1	t0001	154	386	82	74	166	16	46	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	t0002	154	2	2	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	t0003	154	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	t0004	154	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPST1_chr7_66200334_66365443	1/1	t0001	869	267	76	46	110	10	23	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0002	869	45	1	9	32	2	1	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0003	870	16	0	2	14	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0004	870	9	0	0	9	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0005	868	5	0	3	0	2	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0006	869	1	0	1	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0007	869	1	1	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0008	869	1	0	0	1	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	t0009	869	1	0	1	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST2_chr22_26516996_26595132	0/0	t0001	4522	71	8	7	46	0	10	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0002	4524	55	7	11	28	5	4	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0003	4488	50	0	7	33	1	9	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/1	t0004	4480	46	16	10	18	0	1	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0005	4512	33	0	16	13	2	2	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0006	4488	28	1	3	19	2	3	copy fasta	TPST2	chr22	26516996	26595132