JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPST2_chr22_26516996_26595132	0/0	t0007	4521	26	0	9	12	0	5	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0008	4486	16	16	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	1/0	t0009	4520	8	3	2	0	0	2	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0010	4520	6	5	1	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0011	4512	6	6	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0012	4511	5	5	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0013	4480	4	4	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0014	4524	3	0	0	3	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0015	4508	3	0	0	3	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0016	4488	3	3	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0017	4480	3	3	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0018	4489	2	1	1	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0019	4512	2	2	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0020	4480	2	0	0	2	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0021	4512	2	2	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0022	4518	2	1	1	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0023	4488	2	0	1	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0024	4480	2	2	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0025	4480	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0026	4512	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0027	4488	1	0	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0028	4524	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0029	4490	1	0	0	0	0	1	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0030	4522	1	0	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0031	4488	1	0	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0032	4488	1	0	0	0	0	1	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0033	4488	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0034	4521	1	0	1	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0035	4489	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0036	4520	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0037	4512	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0038	4448	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0039	4512	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0040	4480	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0041	4486	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0042	4522	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0043	4488	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	t0044	4486	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPT1_chr13_45328471_45346183	1/1	t0001	4030	161	22	29	83	7	18	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0002	4030	45	2	12	28	1	2	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0003	4030	34	8	14	0	3	9	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0004	4030	29	3	2	21	0	3	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0005	4030	16	12	4	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0006	4031	16	11	3	0	1	1	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0007	4030	11	10	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0008	4030	5	0	0	5	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0009	4031	4	0	1	2	0	1	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0010	4029	4	1	2	0	1	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0011	4030	4	0	0	4	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0012	4031	3	3	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183