JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPT1_chr13_45328471_45346183	0/0	t0013	4030	2	0	0	2	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0014	4030	2	2	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0015	4030	2	0	2	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0016	4030	2	0	2	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0017	4031	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0018	4030	1	0	0	0	0	1	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0019	4031	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0020	4031	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0021	4021	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0022	4031	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0023	4030	1	0	0	0	0	1	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0024	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0025	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0026	4030	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0027	4029	1	0	0	0	1	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0028	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0029	4030	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0030	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0031	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0032	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0033	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0034	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0035	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0036	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0037	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0038	4031	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0039	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0040	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0041	4020	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0042	4030	1	0	0	1	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0043	4030	1	0	1	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPT1_chr13_45328471_45346183	0/0	t0044	4030	1	1	0	0	0	0	copy fasta	TPT1	chr13	45328471	45346183
TPTE2_chr13_19417877_19566532	0/0	t0001	533	117	42	26	29	8	12	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	1/1	t0002	533	103	49	19	15	6	12	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	t0003	533	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	t0004	533	1	0	1	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE_chr21_10516583_10610716	0/0	t0001	487	57	0	15	35	2	5	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0002	486	50	15	4	27	0	4	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0003	487	41	2	6	28	0	5	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0004	487	38	9	5	14	4	6	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0005	487	15	0	8	5	0	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0006	486	2	2	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0007	487	2	0	0	2	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0008	487	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0009	487	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	1/0	t0010	487	1	0	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	t0011	486	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPX2_chr20_31734290_31806800	1/1	t0001	1230	255	76	67	64	16	30	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	t0002	1230	5	4	1	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	t0003	1230	4	2	2	0	0	0	copy fasta	TPX2	chr20	31734290	31806800