JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TPX2_chr20_31734290_31806800	0/0	t0004	1230	2	2	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	t0005	1230	2	1	0	1	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	t0006	1230	1	1	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	t0007	1230	1	0	0	1	0	0	copy fasta	TPX2	chr20	31734290	31806800
TRA2A_chr7_23499780_23536981	1/0	t0001	937	312	49	63	155	11	33	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0002	936	33	9	1	19	2	2	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0003	943	19	7	5	6	1	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0004	938	11	5	2	3	0	1	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0005	940	11	8	3	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0006	937	3	3	0	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0007	937	3	3	0	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0008	937	2	0	0	2	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0009	937	1	1	0	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0010	937	1	0	0	1	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0011	937	1	0	0	1	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0012	937	1	1	0	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	t0013	937	1	0	0	1	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2B_chr3_185909558_185943014	1/1	t0001	3312	136	21	24	69	5	15	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0002	3314	86	1	16	61	1	7	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0003	3309	80	16	13	43	1	7	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0004	3312	78	19	19	24	7	9	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0005	3314	6	5	1	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0006	3314	5	0	2	1	0	2	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0007	3309	4	4	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0008	3314	3	3	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0009	3312	3	2	1	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0010	3314	3	3	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0011	3312	3	3	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0012	3309	3	3	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0013	3314	2	2	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0014	3312	2	1	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0015	3314	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0016	3314	1	0	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0017	3312	1	0	1	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0018	3312	1	0	0	0	1	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0019	3309	1	0	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0020	3312	1	0	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0021	3312	1	0	0	0	0	1	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0022	3309	1	0	0	0	0	1	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0023	3312	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0024	3312	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0025	3312	1	0	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0026	3312	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0027	3312	1	0	0	0	1	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0028	3314	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0029	3314	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0030	3314	1	0	0	1	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0031	3314	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0032	3314	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRA2B_chr3_185909558_185943014	0/0	t0033	3309	1	0	1	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014