JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRA2B_chr3_185909558_185943014	0/0	t0034	3309	1	1	0	0	0	0	copy fasta	TRA2B	chr3	185909558	185943014
TRABD2A_chr2_84816666_84886084	1/1	t0001	297	238	80	56	64	6	30	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2B_chr1_47755528_48002385	0/0	t0001	5971	35	2	3	21	2	7	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0002	5971	29	8	3	13	1	4	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0003	5971	25	9	6	9	1	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	1/0	t0004	5971	23	7	4	3	1	7	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/1	t0005	5971	20	10	5	0	3	1	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0006	5971	11	0	5	3	0	3	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0007	5971	11	0	4	5	0	2	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0008	5971	9	2	0	5	0	2	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0009	5971	8	0	0	8	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0010	5971	7	6	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0011	5971	7	7	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0012	5971	6	3	3	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0013	5971	5	0	3	0	2	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0014	5971	3	3	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0015	5971	3	0	2	0	1	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0016	5971	3	3	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0017	5971	3	0	1	0	1	1	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0018	5971	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0019	5971	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0020	5968	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0021	5971	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0022	5971	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0023	5971	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0024	5971	2	0	2	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0025	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0026	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0027	5971	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0028	5971	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0029	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0030	5971	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0031	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0032	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0033	5968	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0034	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0035	5971	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0036	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0037	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0038	5971	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0039	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0040	5971	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0041	5971	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0042	5971	1	0	0	0	0	1	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0043	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0044	5971	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0045	5971	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	t0046	5971	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD_chr22_50180913_50204595	0/0	t0001	1175	189	36	31	101	5	16	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/1	t0002	1175	140	25	24	67	7	16	copy fasta	TRABD	chr22	50180913	50204595