JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRABD_chr22_50180913_50204595	1/0	t0003	1175	26	2	7	12	2	2	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0004	1175	21	0	10	5	0	6	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0005	1175	14	1	6	1	1	5	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0006	1175	9	9	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0007	1175	8	7	1	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0008	1175	4	4	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0009	1175	3	3	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0010	1175	3	0	1	0	1	1	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0011	1175	2	0	0	2	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0012	1175	2	2	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0013	1175	2	0	0	0	2	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0014	1175	1	0	1	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0015	1175	1	1	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0016	1175	1	0	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0017	1175	1	1	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0018	1175	1	1	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0019	1175	1	0	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	t0020	1175	1	0	1	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRADD_chr16_67149185_67164909	1/1	t0001	545	242	76	48	78	8	30	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	t0002	545	20	12	1	4	0	3	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	t0003	545	11	4	1	0	1	5	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	t0004	545	3	0	2	0	1	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	t0005	545	2	2	0	0	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRAF1_chr9_120897393_120931796	0/0	t0001	3101	111	5	24	59	9	14	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	1/0	t0002	3101	68	12	16	29	3	7	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0003	3099	25	1	0	24	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0004	3102	18	2	4	10	1	1	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0005	3100	15	5	5	0	3	2	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0006	3100	14	11	3	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0007	3100	14	11	0	3	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/1	t0008	3100	14	9	1	3	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0009	3102	10	0	1	6	0	3	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0010	3100	6	6	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0011	3099	6	6	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0012	3100	5	0	4	0	0	1	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0013	3099	4	0	0	4	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0014	3101	4	0	0	4	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0015	3099	4	0	0	4	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0016	3101	3	3	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0017	3100	3	3	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0018	3099	3	0	0	3	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0019	3101	3	2	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0020	3100	3	3	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0021	3101	2	0	2	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0022	3100	2	0	0	2	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0023	3101	2	2	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0024	3102	2	2	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0025	3101	2	2	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0026	3100	2	2	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0027	3101	2	0	0	0	0	2	copy fasta	TRAF1	chr9	120897393	120931796