JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAF1_chr9_120897393_120931796	0/0	t0028	3101	2	0	1	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0029	3099	2	1	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0030	3100	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0031	3101	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0032	3101	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0033	3102	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0034	3100	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0035	3103	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0036	3101	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0037	3099	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0038	3101	1	0	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0039	3102	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0040	3101	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0041	3101	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0042	3099	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0043	3101	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	t0044	3100	1	0	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF2_chr9_136881516_136931607	0/1	t0001	761	165	51	38	54	3	18	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	1/0	t0002	761	71	4	33	18	5	10	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0003	760	27	14	6	3	3	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0004	759	23	5	1	16	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0005	761	8	6	0	0	1	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0006	761	3	1	0	2	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0007	761	2	2	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0008	758	2	2	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0009	761	2	0	0	0	0	2	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0010	759	2	2	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0011	761	1	0	0	1	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0012	761	1	0	0	0	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0013	772	1	1	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0014	761	1	0	1	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	t0015	761	1	0	1	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF3IP1_chr2_238315518_238405897	1/0	t0001	2124	114	23	14	59	1	16	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0002	2124	106	24	18	52	3	9	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0003	2124	46	5	9	18	3	11	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0004	2124	28	26	2	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/1	t0005	2124	9	0	2	6	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0006	2123	7	0	6	0	0	1	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0007	2125	5	1	2	2	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0008	2124	3	3	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0009	2124	3	3	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0010	2123	3	0	1	1	0	1	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0011	2123	3	0	0	2	1	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0012	2124	2	0	0	2	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0013	2125	2	0	0	2	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0014	2123	2	1	1	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0015	2124	1	1	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0016	2123	1	0	0	1	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0017	2124	1	1	0	0	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897
TRAF3IP1_chr2_238315518_238405897	0/0	t0018	2125	1	0	0	1	0	0	copy fasta	TRAF3IP1	chr2	238315518	238405897