JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAF3IP2_chr6_111550381_111610878	0/0	t0050	4133	1	0	0	1	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0051	4135	1	1	0	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0052	4134	1	1	0	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0053	4134	1	0	1	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0054	4134	1	0	0	0	1	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0055	4135	1	0	0	0	0	1	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0056	4134	1	1	0	0	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0057	4133	1	0	0	1	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP2_chr6_111550381_111610878	0/0	t0058	4134	1	0	0	1	0	0	copy fasta	TRAF3IP2	chr6	111550381	111610878
TRAF3IP3_chr1_209751053_209787310	1/1	t0001	579	158	22	27	73	10	24	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0002	579	91	0	15	72	0	4	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0003	579	79	61	8	6	0	4	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0004	579	58	11	12	25	5	5	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0005	579	43	0	9	30	1	3	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0006	579	5	0	0	5	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0007	579	4	0	2	0	2	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0008	579	2	0	0	2	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0009	579	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0010	579	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0011	579	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	t0012	579	1	0	0	1	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3_chr14_102772449_102916500	0/0	t0001	6100	80	3	11	56	2	8	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0002	6100	42	2	13	23	1	3	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/1	t0003	6100	20	4	4	4	1	6	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0004	6100	14	0	4	10	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0005	6100	9	9	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	1/0	t0006	6100	9	1	7	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0007	6100	9	8	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0008	6100	8	7	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0009	6100	7	0	6	0	1	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0010	6100	6	5	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0011	6100	6	2	2	0	0	2	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0012	6100	6	5	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0013	6100	4	4	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0014	6100	4	0	0	4	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0015	6100	3	3	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0016	6100	3	0	0	0	3	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0017	6100	3	3	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0018	6100	3	1	2	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0019	6100	2	2	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0020	6100	2	2	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0021	6098	2	0	1	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0022	6100	2	2	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0023	6100	2	0	0	2	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0024	6100	2	1	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0025	6100	2	2	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0026	6100	2	0	0	0	0	2	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0027	6100	2	0	2	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0028	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0029	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500