JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAF3_chr14_102772449_102916500	0/0	t0030	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0031	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0032	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0033	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0034	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0035	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0036	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0037	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0038	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0039	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0040	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0041	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0042	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0043	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0044	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0045	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0046	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0047	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0048	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0049	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0050	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0051	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0052	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0053	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0054	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0055	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0056	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0057	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0058	6100	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0059	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0060	6100	1	0	0	0	1	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0061	6100	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0062	6100	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0063	6100	1	0	0	0	1	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0064	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0065	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0066	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0067	6098	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0068	6098	1	1	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	t0069	6100	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF4_chr17_28739011_28755956	1/0	t0001	1482	222	46	42	104	7	22	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/1	t0002	1481	92	14	18	45	2	12	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0003	1482	42	22	2	16	0	2	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0004	1481	6	0	1	5	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0005	1482	3	0	0	0	0	3	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0006	1482	2	2	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0007	1482	2	2	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0008	1482	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0009	1482	1	0	1	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0010	1482	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956