JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAF4_chr17_28739011_28755956	0/0	t0011	1482	1	0	1	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0012	1482	1	0	0	1	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0013	1482	1	0	0	0	1	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0014	1481	1	0	0	1	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0015	1482	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0016	1481	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0017	1481	1	0	1	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	t0018	1482	1	0	0	0	0	1	copy fasta	TRAF4	chr17	28739011	28755956
TRAF5_chr1_211321833_211379946	1/1	t0001	2302	169	47	32	61	6	21	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0002	2302	57	5	10	39	0	3	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0003	2302	25	6	3	7	2	7	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0004	2302	19	0	3	6	3	7	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0005	2302	8	7	1	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0006	2302	7	7	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0007	2302	5	0	4	0	1	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0008	2302	5	0	0	5	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0009	2302	5	4	1	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0010	2302	4	0	0	4	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0011	2302	4	4	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0012	2302	2	0	0	0	0	2	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0013	2302	2	2	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0014	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0015	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0016	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0017	2302	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0018	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0019	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0020	2302	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0021	5029	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0022	2302	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0023	2302	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0024	2302	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	t0025	2302	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF6_chr11_36478769_36515272	0/1	t0001	6315	84	10	19	39	6	9	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0002	6315	73	2	11	51	1	8	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0003	6315	64	14	18	20	4	8	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0004	6316	29	5	7	11	1	5	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0005	6315	12	0	9	1	0	2	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0006	6315	10	0	0	10	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0007	6316	9	8	1	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0008	6317	9	9	0	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0009	6315	7	6	1	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0010	6316	6	6	0	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0011	6316	5	0	0	5	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0012	6316	4	4	0	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0013	6316	3	2	1	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0014	6315	3	0	3	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0015	6315	3	0	3	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0016	6316	3	3	0	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	t0017	6315	3	0	0	3	0	0	copy fasta	TRAF6	chr11	36478769	36515272