JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAF6_chr11_36478769_36515272	0/0	t0068	6315	1	0	0	0	0	1	copy fasta	TRAF6	chr11	36478769	36515272
TRAF7_chr16_2150782_2183129	1/1	t0001	1671	247	48	54	96	11	36	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0002	1671	33	30	2	0	1	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0003	1671	11	0	5	0	2	4	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0004	1671	3	1	0	2	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0005	1671	2	2	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0006	1671	2	2	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0007	1671	2	0	0	0	0	2	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0008	1671	2	2	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0009	1671	2	0	0	2	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0010	1671	2	0	0	2	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0011	1671	2	2	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0012	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0013	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0014	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0015	1671	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0016	1658	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0017	1671	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0018	1671	1	0	0	1	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0019	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0020	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0021	1671	1	0	0	1	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0022	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	t0023	1671	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAFD1_chr12_112120560_112158604	1/1	t0001	885	338	90	54	162	4	26	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	t0002	885	6	0	2	0	2	2	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	t0003	885	1	0	0	0	0	1	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	t0004	885	1	0	0	0	0	1	copy fasta	TRAFD1	chr12	112120560	112158604
TRAIP_chr3_49823601_49861564	1/0	t0001	614	151	29	36	54	9	22	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/1	t0002	615	128	48	21	39	4	15	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0003	614	8	7	0	0	0	1	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0004	615	3	2	1	0	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0005	615	2	0	0	1	1	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0006	614	1	1	0	0	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0007	615	1	1	0	0	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0008	615	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	t0009	614	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAK1_chr3_42086357_42230890	0/0	t0001	2264	58	6	13	24	5	10	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0002	2267	57	2	13	36	3	3	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0003	2267	32	16	6	0	3	7	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0004	2267	29	4	5	15	0	5	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0005	2267	27	17	4	0	3	3	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0006	2267	25	14	3	7	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0007	2267	13	13	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0008	2267	7	6	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0009	2267	7	5	2	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	1/1	t0010	2267	5	0	2	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0011	2267	4	0	0	4	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0012	2257	4	3	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0013	2267	4	0	0	0	0	4	copy fasta	TRAK1	chr3	42086357	42230890