JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAK1_chr3_42086357_42230890	0/0	t0014	2267	2	2	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0015	2267	2	0	0	2	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0016	2267	2	2	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0017	2267	2	0	0	2	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0018	2267	2	2	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0019	2267	1	0	0	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0020	2267	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0021	2267	1	0	0	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0022	2267	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0023	2264	1	0	0	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	t0024	2264	1	0	0	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK2_chr2_201372207_201456458	1/0	t0001	3645	94	36	27	24	4	2	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/1	t0002	3645	88	18	14	34	3	18	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0003	3645	39	1	9	21	1	7	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0004	3645	38	12	0	20	0	6	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0005	3645	37	0	0	35	0	2	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0006	3645	18	0	0	18	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0007	3645	14	11	3	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0008	3645	7	7	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0009	3645	6	0	2	0	3	1	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0010	3645	4	0	0	4	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0011	3645	3	1	2	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0012	3645	2	0	0	2	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0013	3645	2	1	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0014	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0015	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0016	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0017	3645	1	0	0	0	1	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0018	3645	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0019	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0020	3646	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0021	3645	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0022	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0023	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0024	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0025	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0026	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0027	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0028	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0029	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0030	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0031	3645	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0032	3645	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	t0033	3645	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAM1L1_chr4_117078554_117090576	1/1	t0001	914	424	87	69	202	18	46	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	t0002	914	9	8	1	0	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	t0003	914	3	3	0	0	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1_chr8_70568218_70613416	0/1	t0001	1933	188	41	29	89	8	20	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	1/0	t0002	1932	56	5	14	32	1	3	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0003	1933	49	30	7	6	0	6	copy fasta	TRAM1	chr8	70568218	70613416