JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAM1_chr8_70568218_70613416	0/0	t0004	1934	9	0	2	3	0	4	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0005	1933	7	1	4	0	2	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0006	1933	3	1	1	0	1	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0007	1931	3	2	1	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0008	1933	3	3	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0009	1935	2	1	1	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0010	1933	2	2	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0011	1934	2	1	1	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0012	1933	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0013	1933	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0014	1933	1	1	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0015	1935	1	0	0	0	0	1	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0016	1933	1	0	1	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	t0017	1933	1	0	1	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM2_chr6_52492408_52582060	0/0	t0001	5934	47	0	4	37	0	6	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0002	5934	26	2	11	7	0	6	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0003	5933	25	0	9	11	1	4	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0004	5932	22	1	1	19	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/1	t0005	5931	19	2	2	6	6	2	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	1/0	t0006	5935	19	8	5	2	2	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0007	5932	17	0	0	17	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0008	5934	16	14	2	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0009	5933	8	6	2	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0010	5934	6	0	5	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0011	5935	6	0	0	6	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0012	5935	5	5	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0013	5932	5	0	0	5	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0014	5934	5	0	0	5	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0015	5932	5	0	0	2	0	3	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0016	5933	5	5	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0017	5933	5	1	2	0	2	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0018	5932	4	0	0	2	0	2	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0019	5934	4	4	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0020	5935	4	0	1	3	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0021	5933	4	0	1	0	2	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0022	5934	3	0	0	3	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0023	5933	3	0	1	0	0	2	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0024	5932	3	0	0	2	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0025	5934	3	2	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0026	5934	3	0	0	3	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0027	5931	3	0	2	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0028	5938	3	2	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0029	5936	3	0	3	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0030	5933	3	2	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0031	5934	3	3	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0032	5933	2	0	1	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0033	5930	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0034	5930	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0035	5927	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0036	5934	2	0	1	0	1	0	copy fasta	TRAM2	chr6	52492408	52582060