Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACSM5_chr16_20404534_20446336	0/0	t0010	1056	6	4	0	1	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0011	1057	4	1	0	3	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0012	1056	4	4	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0013	1056	2	2	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0014	1057	2	0	0	2	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0015	1057	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0016	1056	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0017	848	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0018	1057	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0019	1057	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0020	1057	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	t0021	1057	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM6_chr10_95189238_95233929	1/1	t0001	233	309	84	56	109	16	42	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	t0002	233	4	0	0	4	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	t0003	233	1	0	0	1	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSS1_chr20_25001237_25063139	0/0	t0001	1563	146	58	26	42	4	16	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/1	t0002	1563	29	3	6	15	1	3	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0003	1563	28	12	11	0	4	1	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	1/0	t0004	1563	23	3	9	0	3	7	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0005	1563	6	5	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0006	1563	6	5	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0007	1563	1	0	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0008	1563	1	0	0	0	0	1	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0009	1563	1	0	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0010	1563	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0011	1563	1	0	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	t0012	1563	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS2_chr20_34871612_34932959	1/1	t0001	780	308	85	53	124	16	28	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	t0002	780	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	t0003	780	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	t0004	780	1	0	0	1	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	t0005	780	1	0	0	1	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS3_chr12_81073079_81266210	1/0	t0001	6331	89	20	18	38	2	10	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0002	6331	52	8	6	31	1	6	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/1	t0003	6323	47	7	14	16	1	8	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0004	6323	30	8	5	15	0	2	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0005	6332	20	6	0	12	2	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0006	6331	9	0	0	9	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0007	6332	7	7	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0008	6331	6	6	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0009	6331	4	0	0	4	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0010	6323	2	0	0	1	0	1	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0011	6323	2	0	2	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0012	6323	2	2	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0013	6332	1	0	1	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0014	6331	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0015	6331	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0016	6331	1	0	0	0	0	1	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0017	6331	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0018	6331	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210