Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD9_chr6_38163451_38644929	0/0	t0071	6682	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0072	6681	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0073	6685	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0074	6692	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0075	6688	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0076	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0077	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0078	6684	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0079	6682	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0080	6683	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0081	6684	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0082	6689	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0083	6689	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0084	6689	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0085	6685	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0086	6685	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0087	6685	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0088	6686	1	0	0	0	1	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0089	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0090	6690	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0091	6690	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0092	6688	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0093	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0094	6687	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0095	6688	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0096	6688	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0097	6682	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0098	6687	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0099	6689	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0100	6689	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0101	6689	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0102	6683	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0103	6684	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	1/0	t0104	6692	1	0	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0105	6692	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0106	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0107	6688	1	0	0	0	1	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0108	6692	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0109	6688	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0110	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0111	6690	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0112	6691	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0113	6682	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0114	6686	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0115	6690	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0116	6693	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0117	6691	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0118	6671	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0119	6676	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0120	6674	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929