JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAM2_chr6_52492408_52582060	0/0	t0037	5934	2	1	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0038	5933	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0039	5933	2	0	1	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0040	5934	2	0	1	0	1	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0041	5934	2	0	0	2	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0042	5937	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0043	5934	2	2	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0044	5934	2	1	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0045	5934	2	1	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0046	5934	2	0	0	0	0	2	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0047	5933	2	0	1	0	1	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0048	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0049	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0050	5933	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0051	5932	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0052	5932	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0053	5931	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0054	5931	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0055	5932	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0056	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0057	5930	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0058	5927	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0059	5927	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0060	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0061	5932	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0062	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0063	5932	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0064	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0065	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0066	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0067	5935	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0068	5934	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0069	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0070	5934	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0071	5933	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0072	5933	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0073	5935	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0074	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0075	5932	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0076	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0077	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0078	5931	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0079	5935	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0080	5934	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0081	5934	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0082	5934	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0083	5935	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0084	5931	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0085	5934	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0086	5932	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060