JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAM2_chr6_52492408_52582060	0/0	t0087	5931	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0088	5935	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0089	5935	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0090	5938	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0091	5938	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0092	5935	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0093	5935	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0094	5935	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0095	5935	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0096	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0097	5930	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0098	5935	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0099	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0100	5934	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0101	5933	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0102	5934	1	0	0	1	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0103	5934	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0104	5937	1	1	0	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0105	5934	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	t0106	5933	1	0	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRANK1_chr3_36821819_36950054	1/1	t0001	1702	149	33	37	60	5	12	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0002	1702	124	3	25	77	7	12	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0003	1702	25	19	6	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0004	1702	9	9	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0005	1702	9	9	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0006	1702	5	5	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0007	1702	3	3	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0008	1702	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0009	1702	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0010	1702	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0011	1702	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0012	1702	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	t0013	1702	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRAP1_chr16_3653037_3722524	1/1	t0001	109	412	92	76	184	12	46	copy fasta	TRAP1	chr16	3653037	3722524
TRAPPC10_chr21_44007309_44111552	0/1	t0001	3208	92	8	20	34	7	22	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0002	3208	59	16	11	18	3	11	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0003	3208	39	16	5	17	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0004	3208	15	14	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0005	3206	5	4	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0006	3208	5	0	4	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0007	3206	5	5	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0008	3208	4	0	2	2	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0009	3208	4	4	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0010	3208	3	3	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0011	3208	2	2	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0012	3208	2	1	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0013	3208	2	0	2	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0014	3207	2	1	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0015	3208	1	0	0	1	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0016	3208	1	0	0	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552