JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC10_chr21_44007309_44111552	0/0	t0017	3208	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0018	3207	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0019	3208	1	0	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0020	3208	1	0	0	1	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0021	3208	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	1/0	t0022	3207	1	0	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0023	3208	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0024	3208	1	0	0	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0025	3208	1	0	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0026	3208	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0027	3208	1	0	0	1	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0028	3208	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	t0029	3208	1	0	0	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC11_chr4_183654293_183718589	1/1	t0001	1122	368	68	64	188	14	32	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0002	1122	22	5	2	12	2	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0003	1122	12	10	1	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0004	1122	6	6	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0005	1122	4	3	1	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0006	1122	2	0	0	2	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0007	1122	2	2	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0008	1122	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0009	1122	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0010	1122	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	t0011	1122	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC12_chr2_3374694_3484565	0/1	t0001	292	180	57	31	67	7	17	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	1/0	t0002	292	114	34	13	47	3	16	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	t0003	292	45	1	16	19	4	5	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	t0004	292	3	3	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	t0005	292	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	t0006	292	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC13_chr5_65620027_65671233	0/1	t0001	1656	196	43	43	80	7	22	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	1/0	t0002	1657	138	25	27	64	7	14	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0003	1656	9	9	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0004	1657	6	6	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0005	1656	6	6	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0006	1657	4	4	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0007	1656	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0008	1657	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0009	1657	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0010	1656	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0011	1656	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0012	1657	1	0	0	1	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	t0013	1657	1	0	0	1	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC14_chr7_100149423_100163723	1/1	t0001	813	369	76	63	179	10	39	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0002	813	25	0	3	11	5	6	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0003	812	6	0	2	3	1	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0004	813	1	0	0	0	0	1	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0005	813	1	1	0	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0006	813	1	1	0	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0007	813	1	1	0	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723