JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC14_chr7_100149423_100163723	0/0	t0008	813	1	0	0	1	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	t0009	813	1	1	0	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC1_chr17_7925349_7936946	1/1	t0001	375	422	91	76	197	16	40	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC1_chr17_7925349_7936946	0/0	t0002	375	6	6	0	0	0	0	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC1_chr17_7925349_7936946	0/0	t0003	375	1	0	0	1	0	0	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC1_chr17_7925349_7936946	0/0	t0004	375	1	1	0	0	0	0	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC2B_chr19_57358551_57370405	0/0	t0001	322	228	28	40	120	10	30	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	1/1	t0002	322	164	49	25	70	6	12	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	t0003	322	15	14	1	0	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	t0004	322	2	0	0	2	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	t0005	322	1	1	0	0	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2L_chr16_88852127_88867678	1/1	t0001	1744	239	31	56	102	13	35	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0002	1779	124	18	20	73	2	11	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0003	1779	9	8	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0004	1779	9	8	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0005	1744	8	1	0	7	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0006	1779	5	5	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0007	1744	5	5	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0008	1779	5	5	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0009	1779	4	4	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0010	1779	4	0	0	4	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0011	1779	3	3	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0012	1779	3	2	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0013	1779	2	2	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0014	1779	2	1	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0015	1779	2	0	0	2	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0016	1779	2	2	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0017	1779	2	2	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0018	1779	2	0	0	2	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0019	1779	2	0	0	1	0	1	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0020	1779	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0021	1779	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0022	1779	1	0	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0023	1779	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0024	1744	1	0	0	0	1	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0025	1744	1	0	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0026	1744	1	0	0	0	0	1	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0027	1744	1	0	0	0	0	1	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0028	1784	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0029	1814	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0030	1779	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0031	1779	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0032	1779	1	0	0	0	0	1	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0033	1744	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0034	1744	1	0	0	0	1	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0035	1779	1	0	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0036	1744	1	0	1	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	t0037	1779	1	0	0	0	1	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2_chrX_13707245_13739620	0/0	t0001	2427	105	12	19	60	1	13	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	1/0	t0002	2420	55	9	10	26	6	3	copy fasta	TRAPPC2	chrX	13707245	13739620