JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC2_chrX_13707245_13739620	0/1	t0003	2428	47	11	15	14	3	3	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0004	2427	22	2	2	16	1	1	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0005	2427	5	4	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0006	2428	5	1	1	3	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0007	2429	5	3	0	2	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0008	2428	4	2	2	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0009	2428	4	1	1	1	0	1	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0010	2428	4	1	0	3	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0011	2428	3	2	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0012	2430	3	0	0	3	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0013	2428	3	0	0	1	0	2	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0014	2428	3	0	0	2	0	1	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0015	2428	3	0	0	3	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0016	2421	3	1	0	1	0	1	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0017	2430	3	3	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0018	2429	2	2	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0019	2426	2	1	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0020	2426	2	2	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0021	2429	2	0	0	2	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0022	2427	2	0	0	2	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0023	2428	2	0	0	2	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0024	2429	2	0	0	2	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0025	2430	2	2	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0026	2429	2	2	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0027	2429	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0028	2427	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0029	2431	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0030	2429	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0031	2430	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0032	2426	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0033	2428	1	0	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0034	2426	1	0	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0035	2421	1	0	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0036	2428	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0037	2424	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0038	2423	1	0	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0039	2427	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0040	2421	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0041	2427	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0042	2427	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0043	2427	1	0	1	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0044	2421	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0045	2428	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0046	2431	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0047	2429	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0048	2428	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0049	2429	1	0	0	0	0	1	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0050	2429	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0051	2428	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0052	2429	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620