JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC2_chrX_13707245_13739620	0/0	t0053	2429	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0054	2429	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0055	2429	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0056	2431	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	t0057	2430	1	1	0	0	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC3L_chr6_116489989_116550684	0/1	t0001	2130	234	61	29	103	8	32	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0002	2130	84	2	21	53	5	3	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0003	2130	11	10	0	0	1	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	1/0	t0004	2136	10	2	3	1	1	2	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0005	2131	6	4	1	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0006	2131	3	0	3	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0007	2130	2	0	0	2	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0008	2130	2	0	1	0	1	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0009	2130	1	1	0	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0010	2130	1	1	0	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0011	2130	1	0	0	0	0	1	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0012	2130	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0013	2130	1	1	0	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0014	2130	1	1	0	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0015	2130	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	t0016	2130	1	1	0	0	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3_chr1_36131572_36154486	1/1	t0001	740	384	82	74	180	10	36	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0002	740	4	0	0	4	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0003	740	3	0	0	3	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0004	740	2	0	0	2	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0005	740	1	0	1	0	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0006	740	1	0	1	0	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0007	740	1	1	0	0	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0008	740	1	0	0	1	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0009	740	1	1	0	0	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0010	740	1	0	0	1	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	t0011	740	1	0	0	1	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC4_chr11_119013766_119029134	1/1	t0001	766	257	47	52	125	9	22	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0002	766	74	4	20	27	7	16	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0003	766	30	29	1	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0004	764	10	8	0	0	0	2	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0005	764	6	0	1	5	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0006	766	3	3	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0007	766	2	2	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0008	766	2	2	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0009	767	2	2	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0010	766	1	0	0	1	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	t0011	767	1	1	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC5_chr19_7675833_7692703	1/1	t0001	4942	177	8	47	100	6	14	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0002	4945	36	0	0	35	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0003	4942	32	3	6	9	4	10	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0004	4938	12	0	8	0	2	2	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0005	4937	10	0	0	10	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0006	4942	10	9	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0007	4942	10	1	0	3	0	6	copy fasta	TRAPPC5	chr19	7675833	7692703