JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC5_chr19_7675833_7692703	0/0	t0008	4940	10	0	0	10	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0009	4942	8	8	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0010	4942	6	0	0	6	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0011	4942	6	6	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0012	4942	5	5	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0013	4942	5	5	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0014	4943	4	4	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0015	4945	4	4	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0016	4942	4	4	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0017	4943	4	0	3	0	1	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0018	4942	4	0	0	4	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0019	4942	4	0	0	3	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0020	4943	3	0	3	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0021	4938	3	3	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0022	4942	3	3	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0023	4942	3	2	0	0	1	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0024	4942	3	0	1	1	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0025	4942	3	3	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0026	4945	3	0	0	2	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0027	4942	3	3	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0028	4942	3	0	0	0	0	3	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0029	4942	3	0	1	0	0	2	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0030	4942	2	2	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0031	4942	2	2	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0032	4944	2	2	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0033	4942	2	0	0	2	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0034	4942	2	0	0	2	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0035	4942	2	1	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0036	4942	2	2	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0037	4943	2	2	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0038	4942	2	0	0	0	2	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0039	4942	2	0	0	0	0	2	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0040	4942	2	0	2	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0041	4943	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0042	4938	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0043	4940	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0044	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0045	4937	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0046	4937	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0047	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0048	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0049	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0050	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0051	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0052	4943	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0053	4944	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0054	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0055	4945	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0056	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0057	4941	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703