JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC5_chr19_7675833_7692703	0/0	t0058	4941	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0059	4943	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0060	4944	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0061	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0062	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0063	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0064	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0065	4945	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0066	4942	1	0	0	0	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0067	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0068	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0069	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0070	4945	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0071	4942	1	0	0	0	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0072	4942	1	1	0	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0073	4941	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0074	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0075	4942	1	0	0	0	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0076	4942	1	0	0	0	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0077	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0078	4942	1	0	0	0	1	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0079	4942	1	0	0	0	0	1	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0080	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0081	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0082	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0083	4960	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0084	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0085	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0086	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0087	4942	1	0	1	0	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0088	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0089	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0090	4942	1	0	0	1	0	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	t0091	4942	1	0	0	0	1	0	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC6A_chr19_45157933_45183237	1/1	t0001	279	406	76	77	196	14	41	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0002	279	12	10	2	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0003	279	6	6	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0004	279	3	3	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0005	279	2	1	1	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0006	279	2	2	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0007	279	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0008	279	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	t0009	279	1	0	0	0	0	1	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6B_chr14_39142814_39175333	0/0	t0001	2775	116	17	20	62	7	10	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0002	2775	77	7	6	62	1	1	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0003	2775	49	0	14	16	4	15	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0004	2775	46	13	12	16	1	4	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0005	2775	31	0	6	25	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	1/1	t0006	2775	29	0	14	7	3	3	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0007	2776	20	10	4	3	0	3	copy fasta	TRAPPC6B	chr14	39142814	39175333