JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC6B_chr14_39142814_39175333	0/0	t0008	2775	17	15	2	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0009	2775	7	7	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0010	2775	7	6	1	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0011	2775	6	1	1	0	2	2	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0012	2775	5	5	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0013	2775	4	4	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0014	2775	3	0	0	3	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0015	2776	3	3	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0016	2776	2	2	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0017	2776	1	1	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0018	2776	1	0	0	1	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0019	2775	1	0	0	1	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0020	2775	1	1	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0021	2775	1	1	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0022	2775	1	0	0	0	0	1	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0023	2775	1	1	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	t0024	2775	1	0	0	0	0	1	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC8_chr18_31824197_31948128	1/1	t0001	1923	137	40	26	55	5	9	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0002	1923	113	6	16	69	4	18	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0003	1923	45	19	11	6	4	5	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0004	1924	7	0	1	5	0	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0005	1924	7	2	0	4	0	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0006	1923	6	2	1	0	2	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0007	1923	6	6	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0008	1923	4	4	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0009	1923	4	4	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0010	1923	4	0	0	4	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0011	1924	3	2	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0012	1924	2	0	1	0	0	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0013	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0014	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0015	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0016	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0017	1923	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0018	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0019	1923	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0020	1923	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0021	1923	1	0	0	0	1	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0022	1923	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0023	1923	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	t0024	1924	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC9_chr8_139722725_140462744	0/0	t0001	3453	23	12	9	0	1	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	1/1	t0002	3453	22	9	8	1	0	2	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0003	3452	7	2	5	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0004	3452	7	3	3	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0005	3453	3	2	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0006	3451	3	0	3	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0007	3451	3	3	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0008	3453	3	3	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0009	3453	2	0	1	1	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744