JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRAPPC9_chr8_139722725_140462744	0/0	t0010	3451	2	2	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0011	3451	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0012	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0013	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0014	3452	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0015	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0016	3453	1	0	0	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0017	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0018	3452	1	0	0	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0019	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0020	3452	1	0	0	0	1	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0021	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0022	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0023	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0024	3453	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0025	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0026	3451	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0027	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0028	3453	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0029	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0030	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0031	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0032	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	t0033	3452	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRARG1_chr17_1274662_1305978	0/0	t0001	3055	123	12	22	68	2	19	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0002	3057	73	1	24	39	4	5	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	1/0	t0003	3055	48	17	5	11	3	11	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/1	t0004	3055	23	6	13	0	3	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0005	3043	11	10	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0006	3057	10	2	0	2	1	5	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0007	3055	10	1	0	8	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0008	3051	8	8	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0009	3057	6	0	3	0	0	3	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0010	3053	5	0	0	5	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0011	3055	5	0	0	5	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0012	3055	4	0	0	4	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0013	3055	4	0	0	4	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0014	3057	4	0	1	1	0	2	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0015	3061	3	2	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0016	3059	3	3	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0017	3057	3	0	3	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0018	3057	3	0	0	3	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0019	3057	2	0	2	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0020	3055	2	0	1	0	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0021	3055	2	0	0	2	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0022	3055	2	0	2	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0023	3057	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0024	3061	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0025	3063	2	1	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0026	3057	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978