Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD9_chr6_38163451_38644929	0/0	t0121	6687	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0122	6687	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0123	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0124	6686	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0125	6688	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0126	6688	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0127	6682	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0128	6695	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0129	6693	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0130	6691	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0131	6689	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0132	6685	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0133	6689	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0134	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0135	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0136	6692	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0137	6691	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0138	6678	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0139	6691	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0140	6665	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0141	6663	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0142	6685	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0143	6683	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0144	6684	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/1	t0145	6691	1	0	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0146	6689	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0147	6689	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0148	6680	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0149	6692	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0150	6688	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0151	6686	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0152	6684	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0153	6693	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0154	6690	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0155	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0156	6669	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0157	6656	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0158	6657	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0159	6661	1	0	0	0	0	1	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0160	6657	1	0	0	0	1	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0161	6687	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0162	6690	1	0	0	1	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0163	6667	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0164	6662	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0165	6668	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0166	6663	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0167	6668	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0168	6665	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0169	6667	1	0	1	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0170	6677	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929