JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRARG1_chr17_1274662_1305978	0/0	t0027	3053	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0028	3059	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0029	3053	2	0	1	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0030	3057	2	0	0	2	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0031	3043	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0032	3034	2	2	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0033	3059	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0034	3059	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0035	3055	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0036	3045	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0037	3043	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0038	3057	1	0	0	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0039	3059	1	0	0	0	1	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0040	3057	1	0	0	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0041	3049	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0042	3055	1	0	0	0	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0043	3055	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0044	3059	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0045	3057	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0046	3043	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0047	3055	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0048	3059	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0049	3055	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0050	3045	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0051	3051	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0052	3055	1	0	0	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0053	3057	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0054	3055	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0055	3055	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0056	3032	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0057	3034	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0058	3036	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0059	3061	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	t0060	3055	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRAT1_chr3_108817786_108860005	0/0	t0001	1271	146	15	28	79	5	19	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	1/0	t0002	1271	101	37	23	26	6	8	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0003	1271	34	0	13	5	1	15	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0004	1271	23	19	4	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/1	t0005	1271	14	6	3	0	2	2	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0006	1268	6	6	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0007	1268	6	5	1	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0008	1271	4	4	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0009	1271	2	2	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0010	1271	1	0	0	0	0	1	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0011	1271	1	0	0	0	0	1	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0012	1271	1	1	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	t0013	1271	1	1	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRDMT1_chr10_17132336_17206672	1/0	t0001	11743	35	0	4	28	0	2	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	t0002	11757	27	0	0	26	0	1	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	t0003	11757	25	11	4	3	2	5	copy fasta	TRDMT1	chr10	17132336	17206672