JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRDN_chr6_123211339_123641950	0/0	t0005	2438	7	0	0	7	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0006	2438	6	5	1	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0007	2438	6	0	4	1	1	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0008	2438	4	4	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0009	2438	3	3	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0010	2438	3	3	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0011	2438	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0012	2438	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0013	2436	2	0	0	0	0	2	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0014	2438	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0015	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0016	2438	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0017	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0018	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0019	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0020	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	t0021	2438	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TREH_chr11_118652316_118684650	1/1	t0001	997	175	53	30	57	9	24	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0002	997	117	14	23	68	3	9	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0003	997	69	2	15	41	2	9	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0004	997	16	15	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0005	997	4	4	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0006	997	3	1	2	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0007	997	2	0	0	0	0	2	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0008	997	2	1	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0009	997	2	0	0	2	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0010	997	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	t0011	997	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREM1_chr6_41268605_41291682	1/0	t0001	2548	196	20	22	121	12	20	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/1	t0002	2548	87	7	22	45	3	9	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0003	2548	41	14	9	15	1	2	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0004	2548	18	17	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0005	2548	12	0	9	0	2	1	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0006	2548	9	5	4	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0007	2548	8	8	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0008	2548	6	0	4	2	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0009	2552	6	0	0	0	0	6	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0010	2548	6	6	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0011	2548	3	2	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0012	2548	3	3	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0013	2548	2	2	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0014	2548	2	0	0	2	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0015	2548	2	2	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0016	2548	2	1	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0017	2548	1	0	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0018	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0019	2548	1	0	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0020	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0021	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0022	2548	1	0	0	0	0	1	copy fasta	TREM1	chr6	41268605	41291682