JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TREM1_chr6_41268605_41291682	0/0	t0023	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0024	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0025	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0026	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0027	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0028	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0029	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0030	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0031	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0032	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0033	2548	1	0	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0034	2548	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0035	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0036	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0037	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0038	2548	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	t0039	2552	1	0	0	0	0	1	copy fasta	TREM1	chr6	41268605	41291682
TREM2_chr6_41153508_41168116	1/1	t0001	291	310	87	59	113	13	36	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	t0002	291	9	9	0	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	t0003	291	2	0	0	0	0	2	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	t0004	291	1	0	1	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	t0005	291	1	0	0	1	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	t0006	291	1	0	0	0	1	0	copy fasta	TREM2	chr6	41153508	41168116
TREML1_chr6_41144337_41159347	1/1	t0001	327	291	96	53	92	12	36	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	t0002	327	1	0	1	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML2_chr6_41184749_41206149	0/0	t0001	2818	58	3	8	42	1	4	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	1/0	t0002	2820	49	1	8	29	7	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0003	2816	44	11	12	17	0	4	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0004	2812	22	1	7	10	0	4	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0005	2808	21	0	3	14	1	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0006	2814	16	1	5	5	2	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0007	2822	15	1	2	11	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0008	2824	14	1	0	12	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0009	2810	13	0	6	3	1	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0010	2806	12	0	2	10	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0011	2816	12	12	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0012	2808	11	0	2	9	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0013	2820	7	1	1	2	1	2	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0014	2816	6	1	0	2	0	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0015	2806	6	0	0	6	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0016	2806	6	3	0	3	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0017	2804	6	6	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0018	2818	6	6	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0019	2814	6	0	1	4	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0020	2812	6	0	1	4	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0021	2814	6	1	2	1	0	2	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0022	2826	5	1	1	2	1	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0023	2822	5	1	0	3	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0024	2816	4	0	0	4	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0025	2812	3	0	2	0	0	1	copy fasta	TREML2	chr6	41184749	41206149