JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TREML2_chr6_41184749_41206149	0/0	t0026	2816	3	3	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0027	2814	3	3	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0028	2820	3	3	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0029	2824	3	3	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0030	2824	3	0	0	3	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0031	2820	3	3	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0032	2812	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0033	2818	2	0	0	0	1	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0034	2812	2	0	1	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0035	2808	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0036	2816	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0037	2812	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0038	2816	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0039	2812	2	1	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0040	2802	2	1	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0041	2824	2	0	1	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0042	2818	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0043	2818	2	0	0	0	0	2	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0044	2820	2	2	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0045	2828	2	0	2	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0046	2816	2	0	0	1	1	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0047	2820	2	0	0	2	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0048	2828	2	0	1	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/1	t0049	2812	2	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0050	2818	1	0	0	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0051	2814	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0052	2812	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0053	2808	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0054	2812	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0055	2820	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0056	2810	1	0	0	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0057	2808	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0058	2808	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0059	2818	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0060	2814	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0061	2812	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0062	2810	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0063	2816	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0064	2804	1	0	0	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0065	2804	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0066	2802	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0067	2784	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0068	2822	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0069	2826	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0070	2824	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0071	2816	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0072	2812	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0073	2804	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0074	2828	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0075	2818	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149