JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TREML2_chr6_41184749_41206149	0/0	t0076	2830	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0077	2820	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0078	2818	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0079	2820	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0080	2824	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0081	2814	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0082	2810	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0083	2816	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0084	2812	1	0	0	0	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0085	2810	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0086	2824	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0087	2816	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0088	2820	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0089	2828	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	t0090	2822	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML4_chr6_41223349_41243882	0/1	t0001	1946	160	7	33	97	7	15	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0002	1946	114	2	19	73	6	14	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	1/0	t0003	1943	27	9	5	8	2	2	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0004	1946	21	3	3	14	1	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0005	1946	14	13	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0006	1946	9	0	1	1	0	7	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0007	1946	8	8	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0008	1946	7	0	6	0	0	1	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0009	1943	6	6	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0010	1946	6	5	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0011	1946	6	4	0	0	0	2	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0012	1946	5	2	2	0	1	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0013	1946	5	4	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0014	1946	4	4	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0015	1946	4	4	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0016	1946	4	4	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0017	1943	2	2	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0018	1946	2	2	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0019	1946	2	2	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0020	1946	2	2	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0021	1946	2	0	2	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0022	1943	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0023	1946	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0024	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0025	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0026	1946	1	0	0	0	0	1	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0027	1946	1	0	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0028	1946	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0029	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0030	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0031	1946	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0032	1977	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0033	1946	1	0	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0034	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0035	1946	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882