JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TREML4_chr6_41223349_41243882	0/0	t0036	1946	1	0	0	0	1	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0037	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0038	1946	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	t0039	1946	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TRERF1_chr6_42219931_42456926	0/0	t0001	4207	91	14	15	44	4	14	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/1	t0002	4206	8	5	0	0	0	2	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0003	4206	7	0	2	5	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0004	4207	6	3	2	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0005	4207	4	4	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0006	4206	4	4	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	1/0	t0007	4206	4	1	0	1	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0008	4206	3	3	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0009	4206	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0010	4205	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0011	4206	2	1	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0012	4205	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0013	4206	2	0	0	2	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0014	4207	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0015	4206	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0016	4205	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0017	4205	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0018	4205	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0019	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0020	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0021	4206	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0022	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0023	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0024	4207	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0025	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0026	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0027	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0028	4207	1	0	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0029	4207	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0030	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0031	4207	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0032	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0033	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0034	4207	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0035	4205	1	0	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0036	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0037	4205	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0038	4206	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0039	4207	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0040	4207	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0041	4207	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0042	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0043	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0044	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0045	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0046	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926