JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRERF1_chr6_42219931_42456926	0/0	t0047	4207	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0048	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0049	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0050	4206	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0051	4205	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	t0052	4206	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TREX1_chr3_48461230_48472645	1/0	t0001	152	309	65	52	142	14	35	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/1	t0002	152	38	1	14	11	2	9	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	t0003	152	12	3	0	9	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	t0004	152	11	11	0	0	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX2_chrX_153439473_153451056	1/1	t0001	361	335	80	60	152	10	31	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	t0002	361	1	0	0	0	0	1	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	t0003	360	1	0	0	1	0	0	copy fasta	TREX2	chrX	153439473	153451056
TRHDE_chr12_72267370_72675758	0/1	t0001	7838	35	2	13	14	3	2	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0002	7838	22	14	5	0	2	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0003	7838	22	5	3	12	0	2	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0004	7831	11	1	5	4	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0005	7838	10	10	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0006	7838	7	1	1	2	2	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0007	7838	4	0	3	1	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0008	7832	3	3	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0009	7838	3	3	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0010	7838	2	1	0	0	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0011	7838	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0012	7838	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0013	7836	2	1	1	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0014	7838	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0015	7838	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0016	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0017	7831	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0018	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0019	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0020	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0021	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0022	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0023	7832	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0024	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0025	7836	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	1/0	t0026	7838	1	0	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0027	7838	1	0	0	0	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0028	7838	1	0	0	0	1	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0029	7831	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0030	7838	1	0	0	0	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0031	7831	1	0	1	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0032	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0033	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0034	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0035	7838	1	0	0	0	1	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0036	7838	1	0	0	0	1	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0037	7838	1	0	0	1	0	0	copy fasta	TRHDE	chr12	72267370	72675758