Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTBD9_chr6_38163451_38644929	0/0	t0171	6669	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0172	6686	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0173	6674	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0174	6678	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0175	6676	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0176	6676	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0177	6679	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0178	6672	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0179	6671	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0180	6669	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0181	6672	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0182	6671	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0183	6672	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0184	6673	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0185	6677	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	t0186	6691	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTC_chr4_74739759_74799523	1/0	t0001	2116	153	20	36	71	5	20	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0002	2116	114	31	9	64	3	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/1	t0003	2116	40	10	14	5	3	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0004	2116	13	10	3	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0005	2116	7	0	1	0	1	5	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0006	2116	4	3	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0007	2116	3	3	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0008	2116	3	3	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0009	2116	3	0	3	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0010	2116	3	0	0	3	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0011	2116	2	1	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0012	2116	2	0	0	2	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0013	2116	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0014	2116	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0015	2116	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0016	2116	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0017	2116	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0018	2116	1	0	0	0	0	1	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0019	2116	1	0	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0020	2116	1	0	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0021	2116	1	0	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0022	2116	1	0	0	1	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0023	2116	1	0	0	1	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0024	2116	1	0	1	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	t0025	2116	1	0	0	1	0	0	copy fasta	BTC	chr4	74739759	74799523
BTD_chr3_15596745_15658714	0/0	t0001	8395	64	4	14	27	3	16	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	1/0	t0002	8393	45	4	6	29	1	4	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0003	8393	44	0	8	34	0	2	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0004	8393	35	5	3	22	1	4	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0005	8395	22	3	15	1	2	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0006	8396	22	0	7	15	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0007	8394	13	11	2	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0008	8395	13	0	0	13	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0009	8395	12	1	2	7	0	2	copy fasta	BTD	chr3	15596745	15658714