JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRHDE_chr12_72267370_72675758	0/0	t0038	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0039	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0040	7836	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0041	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0042	7832	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0043	7836	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	t0044	7838	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHR_chr8_109081585_109126565	0/0	t0001	2499	155	24	28	74	9	20	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	1/1	t0002	2498	119	7	21	68	2	19	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0003	2500	45	24	9	6	2	4	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0004	2503	15	14	1	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0005	2504	11	9	2	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0006	2498	4	4	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0007	2499	4	1	1	0	1	1	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0008	2499	4	0	2	2	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0009	2498	3	1	0	0	2	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0010	2499	2	0	0	2	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0011	2503	2	2	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0012	2502	2	2	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0013	2499	2	2	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0014	2498	2	0	1	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0015	2499	2	2	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0016	2499	2	0	2	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0017	2500	1	1	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0018	2499	1	1	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0019	2499	1	0	1	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	t0020	2498	1	0	0	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRH_chr3_129969720_129982935	1/0	t0001	832	381	67	69	187	15	42	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0002	832	14	14	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0003	832	10	3	4	0	3	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0004	832	3	3	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0005	832	1	0	0	0	0	1	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0006	832	1	0	1	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0007	852	1	0	0	1	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0008	832	1	0	0	1	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0009	832	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/1	t0010	832	1	0	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0011	832	1	0	0	1	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	t0012	832	1	0	0	0	0	1	copy fasta	TRH	chr3	129969720	129982935
TRIAP1_chr12_120438964_120451384	1/1	t0001	921	285	79	44	120	14	26	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0002	918	127	16	26	71	1	13	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0003	921	1	1	0	0	0	0	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0004	918	1	0	0	1	0	0	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0005	921	1	0	0	0	1	0	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0006	921	1	0	0	1	0	0	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0007	918	1	0	0	1	0	0	copy fasta	TRIAP1	chr12	120438964	120451384
TRIAP1_chr12_120438964_120451384	0/0	t0008	921	1	0	0	0	0	1	copy fasta	TRIAP1	chr12	120438964	120451384
TRIB1_chr8_125425358_125443403	0/0	t0001	2478	90	18	14	53	1	4	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	1/0	t0002	2478	80	7	9	55	5	3	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0003	2478	40	3	3	29	2	3	copy fasta	TRIB1	chr8	125425358	125443403