JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIB1_chr8_125425358_125443403	0/0	t0004	2478	39	1	3	32	0	3	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0005	2478	36	4	5	12	1	14	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0006	2478	24	5	7	11	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0007	2473	21	9	5	6	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0008	2473	17	4	2	10	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0009	2473	17	0	7	2	1	7	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0010	2473	14	11	2	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0011	2478	14	0	1	4	4	5	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0012	2473	12	0	11	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0013	2478	5	5	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0014	2478	5	4	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0015	2478	5	4	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0016	2478	5	0	0	5	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0017	2478	4	3	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0018	2478	4	3	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0019	2478	4	0	2	0	1	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/1	t0020	2478	4	0	3	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0021	2478	3	1	2	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0022	2473	3	3	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0023	2473	3	2	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0024	2478	3	0	1	0	1	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0025	2478	2	0	0	2	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0026	2473	2	1	0	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0027	2473	2	1	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0028	2473	2	2	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0029	2478	2	0	2	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0030	2478	2	2	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0031	2478	1	0	0	0	1	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0032	2473	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0033	2473	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0034	2473	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0035	2478	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0036	2478	1	0	0	0	1	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0037	2473	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0038	2478	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0039	2473	1	0	0	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0040	2478	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0041	2478	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	t0042	2478	1	0	0	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB2_chr2_12711936_12747734	0/0	t0001	3311	108	4	17	75	1	11	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0002	3311	85	18	14	43	2	8	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	1/0	t0003	3313	72	21	14	25	4	7	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0004	3314	33	23	4	6	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0005	3313	11	11	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0006	3313	10	0	8	0	0	2	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0007	3314	9	0	5	3	1	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0008	3313	8	0	4	0	1	3	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0009	3313	7	0	0	7	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0010	3315	5	5	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0011	3314	4	0	1	1	1	1	copy fasta	TRIB2	chr2	12711936	12747734