JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIB2_chr2_12711936_12747734	0/0	t0012	3311	4	0	0	0	0	4	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0013	3311	4	0	4	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0014	3313	2	2	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0015	3314	2	2	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0016	3311	2	2	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0017	3314	2	1	1	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0018	3311	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/1	t0019	3313	1	0	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0020	3313	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0021	3311	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0022	3312	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0023	3313	1	0	0	0	0	1	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0024	3314	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0025	3313	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0026	3314	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0027	3313	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0028	3311	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0029	3313	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0030	3311	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0031	3311	1	0	0	0	0	1	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0032	3311	1	0	0	0	0	1	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0033	3313	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0034	3315	1	0	0	0	0	1	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0035	3312	1	0	1	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0036	3313	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	t0037	3313	1	0	1	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB3_chr20_375760_402559	1/0	t0001	1280	186	48	21	103	4	9	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/1	t0002	1346	112	8	19	63	1	20	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0003	1247	57	20	20	13	1	3	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0004	1280	24	1	0	22	0	1	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0005	1280	13	4	2	1	1	5	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0006	1313	11	0	2	6	1	2	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0007	1247	9	2	1	2	0	4	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0008	1346	6	0	2	1	2	1	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0009	1280	5	0	1	0	1	3	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0010	1313	4	0	2	0	2	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0011	1280	3	2	1	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0012	1280	3	3	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0013	1280	3	0	1	0	2	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0014	1313	2	0	2	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0015	1313	2	0	2	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0016	1214	2	2	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0017	1511	1	0	1	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0018	1346	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0019	1346	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0020	1346	1	0	0	0	1	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0021	1313	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0022	1280	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0023	1247	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0024	1247	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559