JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIB3_chr20_375760_402559	0/0	t0025	1247	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	t0026	1247	1	0	1	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIL_chr7_28948358_28963330	0/0	t0001	2538	129	14	20	82	0	13	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/1	t0002	2537	104	2	23	53	8	17	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	1/0	t0003	2538	66	36	19	1	4	5	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0004	2537	32	1	2	26	0	3	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0005	2539	18	0	4	11	2	1	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0006	2538	14	8	3	0	0	3	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0007	2537	12	0	0	10	0	2	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0008	2538	8	8	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0009	2538	6	6	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0010	2538	3	3	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0011	2539	3	3	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0012	2537	3	3	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0013	2538	3	0	0	3	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0014	2536	3	2	1	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0015	2537	3	2	1	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0016	2537	2	0	0	0	0	2	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0017	2538	2	2	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0018	2539	2	0	0	1	1	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0019	2538	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0020	2538	1	0	1	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0021	2517	1	0	0	0	1	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0022	2538	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0023	2537	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0024	2538	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0025	2538	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0026	2539	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	t0027	2539	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIM10_chr6_30146943_30166211	0/0	t0001	2380	97	0	10	72	4	11	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0002	2380	91	28	14	40	1	8	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/1	t0003	2380	65	25	5	23	3	8	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0004	2383	54	4	17	28	3	2	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0005	2380	30	1	3	18	5	3	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0006	2380	23	0	0	23	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0007	2383	16	6	4	0	0	6	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0008	2380	11	6	2	0	0	3	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0009	2380	11	8	3	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0010	2380	8	5	3	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0011	2380	7	0	0	1	0	6	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0012	2380	6	4	2	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0013	2379	6	1	4	0	1	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0014	2380	5	0	4	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0015	2380	4	0	3	0	1	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0016	2380	4	0	0	4	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0017	2383	4	0	0	4	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0018	2380	3	0	0	3	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0019	2380	3	0	0	3	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0020	2383	2	1	0	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0021	2380	2	1	0	0	0	1	copy fasta	TRIM10	chr6	30146943	30166211