JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM10_chr6_30146943_30166211	0/0	t0022	2383	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0023	2383	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0024	2380	1	0	0	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0025	2383	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0026	2380	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0027	2380	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0028	2380	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0029	2380	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0030	2380	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0031	2383	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0032	2380	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0033	2380	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	t0034	2380	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM11_chr1_228388676_228411835	1/1	t0001	1304	346	82	63	147	14	38	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0002	1304	20	4	2	13	0	1	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0003	1304	6	6	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0004	1304	4	4	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0005	1304	2	0	0	2	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0006	1304	2	2	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0007	1304	1	0	0	1	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0008	1304	1	0	1	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0009	1304	1	0	0	1	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0010	1304	1	1	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0011	1304	1	1	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	t0012	1304	1	0	0	0	0	1	copy fasta	TRIM11	chr1	228388676	228411835
TRIM13_chr13_49992042_50023467	0/0	t0001	6012	8	0	0	8	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0002	6001	5	0	5	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0003	6030	4	4	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0004	6011	4	2	2	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0005	6004	4	2	1	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	1/0	t0006	6032	4	3	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0007	6033	3	0	0	1	0	2	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0008	6040	3	0	0	3	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0009	6034	3	0	0	3	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/1	t0010	6003	3	0	0	0	0	2	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0011	6013	3	0	0	3	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0012	6012	3	0	0	3	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0013	6032	3	3	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0014	5994	3	3	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0015	6031	3	3	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0016	6031	2	0	0	1	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0017	6031	2	0	0	2	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0018	6004	2	0	0	0	0	2	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0019	5997	2	0	1	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0020	6035	2	1	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0021	6033	2	0	1	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0022	6038	2	0	0	2	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0023	6034	2	0	2	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0024	6036	2	0	0	1	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0025	6009	2	0	1	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467