JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM13_chr13_49992042_50023467	0/0	t0076	6020	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0077	6028	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0078	5995	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0079	6030	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0080	6007	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0081	6029	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0082	6031	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0083	6017	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0084	6031	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0085	6017	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0086	6049	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0087	6026	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0088	6002	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0089	6043	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0090	6049	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0091	6047	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0092	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0093	6048	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0094	6041	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0095	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0096	6013	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0097	6042	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0098	6030	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0099	6035	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0100	6043	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0101	6010	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0102	6041	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0103	6034	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0104	6011	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0105	6037	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0106	6037	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0107	6025	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0108	6026	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0109	6030	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0110	6041	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0111	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0112	6039	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0113	5998	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0114	6009	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0115	6015	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0116	6038	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0117	6044	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0118	6043	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0119	6003	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0120	6003	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0121	6005	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0122	5999	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0123	6035	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0124	6009	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0125	6031	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467