JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM13_chr13_49992042_50023467	0/0	t0176	6016	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0177	6022	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0178	6040	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0179	6003	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0180	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0181	6008	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0182	6033	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0183	6029	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0184	6004	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0185	6019	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0186	6001	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0187	6002	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0188	6039	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0189	6041	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0190	6037	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0191	6025	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0192	6035	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0193	6026	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0194	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0195	6038	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0196	6037	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0197	6003	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0198	6002	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0199	6011	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0200	6039	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0201	6023	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0202	6040	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0203	6009	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0204	6037	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0205	6015	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0206	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0207	6038	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0208	6039	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0209	6039	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0210	6034	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0211	5999	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0212	6005	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0213	6004	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0214	6011	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0215	6041	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0216	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0217	6000	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0218	6004	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0219	5999	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0220	6012	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0221	6038	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0222	6040	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0223	6030	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0224	6004	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0225	6012	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467