JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM13_chr13_49992042_50023467	0/0	t0226	6001	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0227	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0228	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0229	6045	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0230	6032	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0231	6020	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0232	6011	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0233	6037	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0234	6041	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0235	6019	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0236	5987	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0237	6000	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0238	5999	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0239	6029	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0240	6033	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0241	6006	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0242	6006	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0243	6031	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0244	6027	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0245	6001	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0246	6014	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0247	6007	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0248	6012	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0249	6026	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0250	6017	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0251	6040	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0252	6040	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0253	6007	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0254	6028	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0255	6039	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0256	6041	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0257	6018	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0258	6048	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0259	6047	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0260	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0261	6040	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0262	6042	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0263	6043	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0264	6049	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0265	6032	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0266	6047	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0267	6047	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0268	6058	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0269	6031	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0270	6010	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0271	6049	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0272	6018	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0273	6010	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0274	6058	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0275	6003	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467