Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
BTD_chr3_15596745_15658714	0/0	t0010	8393	8	0	0	8	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0011	8397	8	7	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0012	8395	7	6	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0013	8392	6	1	2	0	3	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0014	8394	6	4	1	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0015	8392	5	5	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0016	8392	5	4	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0017	8395	5	0	1	2	2	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0018	8399	4	0	0	4	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0019	8396	4	0	4	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0020	8395	4	4	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0021	8393	3	0	0	3	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/1	t0022	8395	3	1	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0023	8393	3	3	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0024	8395	3	0	0	0	3	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0025	8395	3	3	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0026	8395	3	3	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0027	8394	2	0	0	2	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0028	8395	2	0	0	0	2	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0029	8397	2	0	0	2	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0030	8393	2	2	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0031	8395	2	2	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0032	8395	2	2	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0033	8394	1	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0034	8392	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0035	8392	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0036	8392	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0037	8392	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0038	8394	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0039	8394	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0040	8395	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0041	8392	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0042	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0043	8394	1	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0044	8394	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0045	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0046	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0047	8380	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0048	8395	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0049	8395	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0050	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0051	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0052	8393	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0053	8392	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0054	8392	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0055	8395	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0056	8358	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0057	8395	1	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0058	8395	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0059	8395	1	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714