JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM13_chr13_49992042_50023467	0/0	t0276	6007	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0277	6035	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0278	6043	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0279	6050	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0280	5993	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0281	6001	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0282	6002	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0283	6004	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0284	5995	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0285	6012	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0286	6025	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0287	6042	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0288	6020	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0289	6038	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0290	6031	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0291	6001	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0292	6037	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0293	6033	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0294	6017	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0295	5998	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0296	5996	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0297	5997	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0298	5995	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0299	6035	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0300	6020	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0301	5997	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0302	6019	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0303	5999	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0304	6004	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0305	5997	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0306	5984	1	0	0	0	0	1	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0307	6000	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0308	6002	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0309	6012	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0310	5996	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0311	6000	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0312	6000	1	0	0	0	1	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0313	6001	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0314	6000	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0315	6006	1	0	1	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0316	6005	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0317	6011	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0318	6034	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0319	6016	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0320	6002	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0321	6030	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0322	6020	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0323	6033	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0324	6020	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	t0325	6032	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467