JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM14_chr9_98079353_98124222	1/1	t0001	3152	96	4	14	56	8	12	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0002	3152	79	18	18	42	0	1	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0003	3152	69	29	6	13	3	18	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0004	3152	41	0	4	33	0	4	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0005	3152	23	2	11	6	2	2	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0006	3152	8	6	2	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0007	3153	6	6	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0008	3152	4	0	0	4	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0009	3152	3	3	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0010	3152	2	0	2	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0011	3152	2	2	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0012	3152	2	0	0	2	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0013	3152	1	0	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0014	3152	1	0	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0015	3153	1	1	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0016	3152	1	0	0	0	1	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0017	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0018	3152	1	1	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0019	3152	1	0	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0020	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0021	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0022	3152	1	1	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0023	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0024	3152	1	1	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0025	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0026	3153	1	0	0	0	0	1	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0027	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0028	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	t0029	3152	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM15_chr6_30158546_30177693	0/1	t0001	484	304	89	55	118	12	29	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0002	506	83	0	9	62	3	9	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0003	484	30	2	7	18	0	3	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0004	484	27	0	8	17	1	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0005	502	9	0	3	0	0	6	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0006	502	6	6	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0007	498	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	t0008	484	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM16_chr17_15622966_15689311	1/1	t0001	1664	156	29	43	69	2	11	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0002	1664	117	14	17	69	3	14	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0003	1664	16	16	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0004	1665	16	1	2	7	0	6	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0005	1665	7	1	1	5	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0006	1664	7	6	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0007	1664	6	6	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0008	1665	6	6	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0009	1664	3	3	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0010	1664	3	0	2	0	1	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0011	1665	3	0	0	3	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0012	1664	2	2	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0013	1664	2	0	2	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311